Bioinformatics Tutorials for Bacterial Genomics

  • jhayer/bacterial_genomics_training
  • jhayer
  • Main page
  • Computing Basics
    • The Unix system
    • Project organisation
    • iTrop computing cluster
  • Sequencing data analyses
    • File formats
    • Short Reads Quality Control and Trimming
    • Short reads assembly
    • Long reads
    • Hybrid assembly
    • Mapping and variant calling
  • Bacterial Genomics and AMR
    • MLST
    • Antimicrobial Resistance Genes
    • Plasmids
    • Annotation
    • Pangenome
  • Metagenomics
    • Viral Metagenomics
  • For the teachers
    • Mkdocs usage