BInDER
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Assembly
Lecture QC reads
Introduction to Galaxy
Read QC and trimming
Raw read contamination check
Lecture assembly
Assembly (Short-read)
Assembly (Long-read)
Assembly (Hybrid)
Assembly QC
Assembly Visualisation
(Bonus) Sars Cov2 variant analysis
Annotation
Introduction
Data preparation
QC pre annotation
Structural annotation (Concept)
Structural annotation (Practical)
QC post annotation
Visualisation
Functional annotation (Concept)
Functional annotation (Practical)
AMR genes and virulence factors
Metabarcoding
Introduction to the study
16S rRNA amplicon sequencing
Diversity Analysis
Pangenome and phylogenomics
PanExplorer
Shotgun Metagenomics
Lecture shotgun MG
Taxonomic profiling
MAG assembly and binning
Cheat sheets
Genome annotation tools
GFF/GTF formats
Visualisation
Source Code
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Which genome browser to use for my data ?
Which genome browser to use for my data ?